Welcome to SNPio’s documentation!
SNPio is a Python package designed for efficient input/ output, filtering, encoding, and analysis of SNP (Single Nucleotide Polymorphism) data. It provides tools for reading, filtering, analyzing, and visualizing SNP data from various formats. It is intended to be efficient, intuitive, and easy to use for researchers working with genetic data.
This documentation provides an overview of the package’s modules, classes, and functions, along with examples and usage guidelines.
Contents:
- Getting Started
- Filtering Genotype Data with NRemover2
- Encoding Genotype Data
- Population Genetic Analysis
- Allele Summary Statistics
- MultiQC Report Generation
- Tree Parsing and Phylogenetic Analysis (Experimental)
- References
- Example Script
- Changelog
- Version 1.6.16 (2026-05-20)
- Version 1.6.15 (2026-05-20)
- Version 1.6.14 (2026-05-20)
- Version 1.6.11 (2025-10-05)
- Version 1.6.10 (2025-10-05)
- Version 1.6.9 (2025-10-05)
- Version 1.6.8 (2025-10-03)
- Version 1.6.7 (2025-09-25)
- Version 1.6.6 (2025-09-24)
- Version 1.6.5 (2025-09-24)
- Version 1.6.4 (2025-09-20)
- Version 1.6.3 (2025-09-20)
- Version 1.6.2 (2025-09-15)
- Version 1.6.1 (2025-09-01)
- Version 1.6.0 (2025-07-24)
- Version 1.5.5 (2025-07-07)
- Version 1.5.0 (2025-07-04)
- Version 1.3.21 (2025-06-16)
- Version 1.3.15 (2025-06-14)
- Version 1.3.14 (2025-06-12)
- Version 1.3.13 (2025-06-12)
- Version 1.3.11 (2025-06-12)
- Version 1.3.9 (2025-06-11)
- Version 1.2.1 (2025-01-06)
- Version 1.2.0 (2024-11-07)
- Version 1.1.3 (2024-10-25)
- Version 1.1.0 (2024-10-08)
- Version 1.0.5 (2023-09-16)
- Version 1.0.4 (2023-09-10)
- Version 1.0.3.2 (2023-08-28)
- Version 1.0.3 (2023-08-27)
- Version 1.0.2 (2023-08-13)