SNPio
stable
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Getting Started
Example script
snpio package
snpio
Changelog
SNPio
Index
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Index
_
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A
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B
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C
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E
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F
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G
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H
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L
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M
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N
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P
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R
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S
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U
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V
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W
_
_i (snpio.utils.sequence_tools.slidingWindowGenerator attribute)
_original_stdout (snpio.utils.misc.HiddenPrints attribute)
_seq (snpio.utils.sequence_tools.slidingWindowGenerator attribute)
_seqlen (snpio.utils.sequence_tools.slidingWindowGenerator attribute)
_shift (snpio.utils.sequence_tools.slidingWindowGenerator attribute)
_width (snpio.utils.sequence_tools.slidingWindowGenerator attribute)
A
align_columns() (in module snpio.utils.misc)
all_zero() (in module snpio.utils.misc)
B
blacklist_maf() (in module snpio.utils.sequence_tools)
blacklist_missing() (in module snpio.utils.sequence_tools)
C
class_performance_decorator() (in module snpio.utils.misc)
count_alleles() (in module snpio.utils.sequence_tools)
E
expand012() (in module snpio.utils.sequence_tools)
expandAmbiquousDNA() (in module snpio.utils.sequence_tools)
expandLoci() (in module snpio.utils.sequence_tools)
F
flush() (snpio.utils.misc.StreamToLogger method)
G
gc_content() (in module snpio.utils.sequence_tools)
gc_counts() (in module snpio.utils.sequence_tools)
generate_012_genotypes() (in module snpio.utils.misc)
generate_random_dataset() (in module snpio.utils.misc)
get_attributes() (in module snpio.utils.misc)
get_indices() (in module snpio.utils.misc)
get_iupac_caseless() (in module snpio.utils.sequence_tools)
get_iupac_full() (in module snpio.utils.sequence_tools)
get_major_allele() (in module snpio.utils.sequence_tools)
get_processor_name() (in module snpio.utils.misc)
get_revComp_caseless() (in module snpio.utils.sequence_tools)
getFlankCounts() (in module snpio.utils.sequence_tools)
H
HiddenPrints (class in snpio.utils.misc)
L
linebuf (snpio.utils.misc.StreamToLogger attribute)
listToSortUniqueString() (in module snpio.utils.sequence_tools)
log_level (snpio.utils.misc.StreamToLogger attribute)
logger (snpio.utils.misc.StreamToLogger attribute)
M
mask_content() (in module snpio.utils.sequence_tools)
mask_counts() (in module snpio.utils.sequence_tools)
measure_performance_for_class_method() (in module snpio.utils.misc)
measure_performance_for_instance_method() (in module snpio.utils.misc)
module
snpio
snpio.utils
snpio.utils.misc
snpio.utils.sequence_tools
N
n_lower_chars() (in module snpio.utils.sequence_tools)
P
progressbar() (in module snpio.utils.misc)
R
remove_items() (in module snpio.utils.sequence_tools)
reverseComplement() (in module snpio.utils.sequence_tools)
S
seqCounter() (in module snpio.utils.sequence_tools)
seqCounterSimple() (in module snpio.utils.sequence_tools)
seqSlidingWindow() (in module snpio.utils.sequence_tools)
seqSlidingWindowString() (in module snpio.utils.sequence_tools)
simplifySeq() (in module snpio.utils.sequence_tools)
slidingWindowGenerator (class in snpio.utils.sequence_tools)
snpio
module
snpio.utils
module
snpio.utils.misc
module
snpio.utils.sequence_tools
module
StreamToLogger (class in snpio.utils.misc)
stringSubstitute() (in module snpio.utils.sequence_tools)
U
unique2D_subarray() (in module snpio.utils.misc)
V
validate_input_type() (in module snpio.utils.misc)
W
weighted_draw() (in module snpio.utils.misc)
write() (snpio.utils.misc.StreamToLogger method)
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