SNPio

Contents:

Getting Started
Filtering Genotype Data with NRemover2
Encoding Genotype Data
Population Genetic Analysis
Allele Summary Statistics
MultiQC Report Generation
Tree Parsing and Phylogenetic Analysis (Experimental)
References
Example Script
Changelog

API Reference:

API Reference
snpio.io package
snpio.filtering
snpio.popgenstats package
snpio.analysis
- snpio.analysis.genotype_encoder.GenotypeEncoder
- snpio.analysis.tree_parser.TreeParser
snpio.plotting package

SNPio

snpio.analysis
Edit on GitHub

snpio.analysis

GenotypeEncoder

Encode genotypes to various formats suitable for machine learning.

TreeParser class for reading and manipulating phylogenetic trees.

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© Copyright 2023, Bradley T. Martin and Tyler K. Chafin.

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