SNPio

Contents:

Getting Started
Filtering Genotype Data with NRemover2
Encoding Genotype Data
Population Genetic Analysis
Allele Summary Statistics
MultiQC Report Generation
Tree Parsing and Phylogenetic Analysis (Experimental)
References
Example Script
Changelog

API Reference:

API Reference
snpio.io package
snpio.filtering
snpio.popgenstats package
- snpio.popgenstats.pop_gen_statistics.PopGenStatistics
snpio.analysis
snpio.plotting package

SNPio

snpio.popgenstats package
Edit on GitHub

snpio.popgenstats package

PopGenStatistics

Class for calculating population genetics statistics from SNP data.

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© Copyright 2023, Bradley T. Martin and Tyler K. Chafin.

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