API Reference

This is the main public API for the snpio package.

VCFReader	A class to read VCF files into GenotypeData objects and write GenotypeData objects to VCF files.
PhylipReader	Class to read and write PHYLIP files.
StructureReader	Read STRUCTURE file into a GenotypeData object.
GenePopReader	Reads GenePop-formatted files into a GenotypeData object.
NRemover2	A class for filtering alignments based on various criteria.
PopGenStatistics	Class for calculating population genetics statistics from SNP data.
GenotypeEncoder	Encode genotypes to various formats suitable for machine learning.
Plotting	Class containing various methods for generating plots based on genotype data.
TreeParser	TreeParser class for reading and manipulating phylogenetic trees.
SNPioMultiQC	A MultiQC module and an in-process builder.