SNPio

Contents:

Getting Started
Filtering Genotype Data with NRemover2
Encoding Genotype Data
Population Genetic Analysis
Allele Summary Statistics
MultiQC Report Generation
Tree Parsing and Phylogenetic Analysis (Experimental)
References
Example Script
Changelog

API Reference:

API Reference
snpio.io package
snpio.filtering
snpio.popgenstats package
snpio.analysis
snpio.plotting package
- snpio.plotting.plotting.Plotting

SNPio

snpio.plotting package
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snpio.plotting package

Class containing various methods for generating plots based on genotype data.

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© Copyright 2023, Bradley T. Martin and Tyler K. Chafin.

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