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Contents:

  • Getting Started
  • Filtering Genotype Data with NRemover2
  • Encoding Genotype Data
  • Population Genetic Analysis
  • Allele Summary Statistics
  • MultiQC Report Generation
  • Tree Parsing and Phylogenetic Analysis (Experimental)
  • References
  • Example Script
  • Changelog

API Reference:

  • API Reference
  • snpio.io package
  • snpio.filtering
  • snpio.popgenstats package
  • snpio.analysis
  • snpio.plotting package
SNPio
  • Overview: module code

All modules for which code is available

  • snpio.analysis.genotype_encoder
  • snpio.analysis.tree_parser
  • snpio.filtering.nremover2
  • snpio.io.genepop_reader
  • snpio.io.phylip_reader
  • snpio.io.structure_reader
  • snpio.io.vcf_reader
  • snpio.plotting.plotting
  • snpio.popgenstats.pop_gen_statistics
  • snpio.utils.multiqc_reporter

© Copyright 2023, Bradley T. Martin and Tyler K. Chafin.

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